Index

A

avx2_popcnt_64_native_movdq (C++ function) avx2_popcnt_64_native_unrolled_errata (C++ function) avx2_popcnt_cpu (C++ function) avx2_popcnt_harley_seal (C++ function) avx2_popcnt_lookup (C++ function) avx2_popcnt_lookup_original (C++ function) avx512bw_popcnt_256_cpu (C++ function)

avx512bw_popcnt_256_harley_seal (C++ function) avx512bw_popcnt_256_lookup (C++ function) avx512bw_popcnt_256_lookup_original (C++ function) avx512bw_popcnt_64_native_movdq (C++ function) avx512bw_popcnt_64_native_unrolled_errata (C++ function) avx512bw_popcnt_harley_seal (C++ function) avx512bw_popcnt_lookup (C++ function) avx512vpopcntdq_native_popcnt (C++ function)

C

ContingencyTable (C++ class) ContingencyTable::cases (C++ member) ContingencyTable::ContingencyTable (C++ function)

ContingencyTable::ctrls (C++ member) ContingencyTable::size (C++ member) CSA (C++ function), [1], [2]

D

Dataset (C++ class) Dataset::cases (C++ member) Dataset::ctrls (C++ member) Dataset::data (C++ member) Dataset::operator[] (C++ function) Dataset::read (C++ function) Dataset::snps (C++ member) Distribution (C++ class)

Distribution::begin (C++ function) Distribution::const_iterator (C++ class) Distribution::Distribution (C++ function) Distribution::end (C++ function) Distribution::k (C++ member) Distribution::layer (C++ function) Distribution::n (C++ member) Distribution::offset (C++ member) Distribution::step (C++ member)

G

GenotypeTable (C++ class) GenotypeTable::cases (C++ member) GenotypeTable::cases_words (C++ member) GenotypeTable::combine (C++ function) GenotypeTable::combine_and_popcnt (C++ function)

GenotypeTable::ctrls (C++ member) GenotypeTable::ctrls_words (C++ member) GenotypeTable::GenotypeTable (C++ function) GenotypeTable::order (C++ member) GenotypeTable::size (C++ member)

I

iter (C++ function), [1], [2], [3]

M

MPIEngine (C++ class) MPIEngine::MPIEngine (C++ function) MPIEngine::run (C++ function)

MutualInformation (C++ class) MutualInformation::compute (C++ function) MutualInformation::MutualInformation (C++ function)

P

popcount (C++ function), [1], [2]

S

Search (C++ class)

Search::run (C++ function)

T

ThreadedSearch (C++ class)

ThreadedSearch::run (C++ function) ThreadedSearch::ThreadedSearch (C++ function)